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Journal article
Genetic variation in field voles (Microtus agrestis) from the British Isles: selective sweeps or population bottlenecks?
The Eurasian field vole (Microtus agrestis) comprises three evolutionarily significant units (ESUs). The northern ESU is found at higher latitudes across the western Palaearctic region and includes six, largely allopatric, mitochondrial DNA lineages that were derived from population bottlenecks. One of these lineages is found in southern Britain and nearby...Herman, Jeremy S ; Stojack, Joanna ; Paupério, Joana ; Jaarola, M ; Wojcik, J M …
Y-chromosome, cytochromeb, selection, post-glacial colonization, population bottleneck, and microsatellite
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Journal article
The Celtic fringe of Britain: insights from small mammal phylogeography.
Recent genetic studies have challenged the traditional view that the ancestors of British Celtic people spread from central Europe during the Iron Age and have suggested a much earlier origin for them as part of the human recolonization of Britain at the end of the last glaciation. Here we propose...Searle, Jeremy B ; Kotlik, Petr ; Rambau, Ramugondo V ; Markova, Silvia ; Herman, Jeremy S …
mitochondrial DNA, Myodes glareolus, Sorex minutus, Colonization history, and Microtus agrestis
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Journal article
Of mice and (Viking?) men: phylogeography of British and Irish house mice
The west European subspecies of house mouse (Mus musculus domesticus) has gained much of its current widespread distribution through commensalism with humans. This means that the phylogeography of M. m. domesticus should reflect patterns of human movements. We studied restriction fragment length polymorphism (RFLP) and DNA sequence variations in mouse... -
Journal article
Colonization of Ireland: revisiting ‘the pygmy shrew syndrome’ using mitochondrial, Y chromosomal and microsatellite markers
There is great uncertainty about how Ireland attained its current fauna and flora. Long-distance human-mediated colonization from southwestern Europe has been seen as a possible way that Ireland obtained many of its species; however, Britain has (surprisingly) been neglected as a source area for Ireland. The pygmy shrew has long...McDevitt, A D ; Vega, R ; Rambau, Ramugondo V ; Yannic, G ; Herman, Jeremy S …
phylogeography, cytochrome b, British Isles, human introduction, Sorex minutus, and range expansion
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Journal article
Post-glacial partitioning of mitochondrial genetic variation in the field vole
Genetic markers are often used to examine population history. There is considerable debate about the behaviour of molecular clock rates around the population-species transition. Nevertheless, appropriate calibration is critical to any inference regarding the absolute timing and scale of demographic changes. Here, we use a mitochondrial cytochrome b gene genealogy,...Herman, Jeremy S ; Searle, Jeremy B
Younger Dryas, gene genealogy, molecular clock, phylogeography, Microtus agrestis, and population history
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Journal article
Climate and refugial origin influence the mitochondrial lineage distribution of weasels (Mustela nivalis) in a phylogeographic suture zone
Overarching trends can be seen in European mammalian phylogeography, yet it is clear that species responded differently depending on adaptations to past environments. We built upon previous work on the phylogeography of weasels (Mustela nivalis) in Europe by using well-preserved museum specimens from a proposed phylogeographic suture zone. The complete...McDevitt, A D ; Zub, K ; Kawalko, Agato ; Oliver, M K ; Herman, Jeremy S …
adaptation, phylogeography, cytochrome b, museum specimens, and Carpathian refugium
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Journal article
Climate and refugial origin influence the mitochondrial lineage distribution of weasels (Mustela nivalis) in a phylogeographic suture zone
Overarching trends can be seen in European mammalian phylogeography, yet it is clear that species responded differently depending on adaptations to past environments. We built upon previous work on the phylogeography of weasels (Mustela nivalis) in Europe by using well-preserved museum specimens from a proposed phylogeographic suture zone. The complete...McDevitt, Allan D ; Zub, Karol ; Kawalko, Agata ; Oliver, Matthew K ; Herman, Jeremy S …
adaptation, phylogeography, cytochrome b, museum specimens, and Carpathian refugium
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Journal article
Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia
Species are generally described from morphological features, but there is growing recognition of sister forms that show substantial genetic differentiation without obvious morphological variation and may therefore be considered 'cryptic species'. Here, we investigate the field vole (Microtus agrestis), a Eurasian mammal with little apparent morphological differentiation but which, on...Pauperio, J ; Herman, Jeremy S ; Melo-Ferraira, J ; Jaarola, M ; Alves, P C …
species tree, demography, cryptic species, phylogeography, and Microtus agrestis
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Journal article
First records of the pygmy sperm whale, Kogia breviceps, in Scotland
The pygmy sperm whale, Kogia breviceps, is a poorly known cetacean species, which has been recorded rarely in the British Isles (Leaper and Evans, 2008). It is an oceanic species that inhabits tropical to warmer temperate waters worldwide (Caldwell and Caldwell, 1989). In the North Atlantic it strands reasonably commonly...Kitchener, Andrew C ; Herman, Jeremy S ; Reid, R J ; Anderson, N
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Journal article
Species identification of archaeological marine mammals using collagen fingerprinting
Throughout human history, coastal and marine resources have been a vital part of human subsistence. As a result archaeological faunal assemblages from coastal sites often contain large quantities of skeletal remains indicative of human interaction with marine mammals. However, these are often hard to identify due to a unique combination...Buckley, M ; Fraser, S ; Herman, Jeremy S ; Melton, N D ; Mulville, J …
Proteomics, Cetaceans, Marine mammals, Pinnipeds, Archaeological collagen, ZooMS, and Species identification
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Journal article
Land-bridge calibration of molecular clocks and the post-glacial colonization of Scandinavia by the Eurasian field vole Microtus agrestis
Phylogeography interprets molecular genetic variation in a spatial and temporal context. Molecular clocks are frequently used to calibrate phylogeographic analyses, however there is mounting evidence that molecular rates decay over the relevant timescales. It is therefore essential that an appropriate rate is determined, consistent with the temporal scale of the...Herman, Jeremy S ; McDevitt, Allan D ; Kawalko, Agato ; Jaarolo, Maarit ; Wójcik, J M …
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Journal article
Post-glacial colonization of eastern Europe by small mammals that survived in the Carpathian refugium: evidence from mitochondrial DNA of the common vole
There is now considerable evidence for the survival of temperate species within glacial refugia that were situated at relatively high latitudes, notably the Carpathian Basin and Dordogne region in Europe. However, the prevalence of fossil remains in such locations is rarely matched by molecular evidence for their contribution to subsequent...Stojak, Joanna ; McDevitt, Allan D ; Herman, Jeremy S ; Searle, Jeremy B ; Wójcik, Jan M
phylogeography, glacial refugia, cytochrome b, museum specimens, Last Glacial Maximum, and small mammals
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Journal article
Osteoarthritis of the temporo-mandibular joint in free-living Soay sheep on St Kilda
Osteoarthritis (OA) is a common degenerative disease of synovial joints with the potential to cause pathology and welfare issues in both domestic and wild ruminants. Previous work has identified OA of the elbow joint in domestic sheep, but the prevalence of OA of the jaw and in particular the temporomandibular...Stojak, J ; McDevitt, A D ; Herman, Jeremy S ; Searle, Jeremy B ; Wojcik, J M
Radiography, Sheep, Temporo-mandibular joints, St Kilda, and Osteoarthritis
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Journal article
Corrigendum to “Species identification of archaeological marine mammals using collagen fingerprinting” [YJASC 41 (2014) 631–641]
Throughout human history, coastal and marine resources have been a vital part of human subsistence. As a result archaeological faunal assemblages from coastal sites often contain large quantities of skeletal remains indicative of human interaction with marine mammals. However, these are often hard to identify due to a unique combination...Buckley, M ; Fraser, S ; Herman, Jeremy S ; Melton, N D ; Mulville, J …
Proteomics, Cetaceans, Marine mammals, Pinnipeds, Archaeological collagen, ZooMS, and Species identification
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Journal article
R2d2 drives selfish sweeps in the house mouse
A selective sweep is the result of a strong positive selection driving newly occurring or standing genetic variants to fixation, and can dramatically alter the pattern and distribution of allelic diversity in a population. Population-level sequencing data have enabled discoveries of selective sweeps associated with genes involved in recent adaptions...Didion, J P ; Morgan, A P ; Yadgary, L ; Bell, T A ; McMullan, R C …
house mouse, selfish genes, Meiotic drive, selective sweep, and R2d2
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Journal article
Rodents: food or pests in Neolithic Orkney
Rodents have important effects on contemporary human societies, sometimes providing a source of food but more often as agricultural pests, or as vectors and reservoirs of disease. Skeletal remains of rodents are commonly found in archaeological assemblages from around the world, highlighting their potential importance to ancient human populations. However,...Romaniuk, Andrzej A ; Shepherd, Alexandra N ; Clarke, David V ; Sheridan, J A ; Fraser, Sheena …
Rodentia, Microtus arvalis, human subsistence, archaeology, and animal osteology
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Journal article
Post-glacial colonization of eastern Europe by the wood mouse, Apodemus sylvaticus: evidence of a northern refugium and dispersal with humans
The wood mouse Apodemus sylvaticus is an opportunistic rodent that is found throughout most of the European mainland. It is present on many islands around the margins of the continent and in northern Africa. The species has been the subject of previous phylogeographical studies, although these have focussed on the... -
Journal article
Between the Balkans and the Baltic: Phylogeography of a common vole Mitochondrial DNA lineage limited to Central Europe
The common vole (Microtus arvalis) has been a model species of small mammal for studying end-glacial colonization history. In the present study we expanded the sampling from central and eastern Europe, analyzing contemporary genetic structure to identify the role of a potential ‘northern glacial refugium’, i.e. a refugium at a...Stojak, Joanna ; McDevitt, Allan D ; Herman, Jeremy S ; Kryštufek, Boris ; Uhlíková, Jitka …
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Journal article
Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole
Glacial refugia protected and promoted biodiversity during the Pleistocene, not only at a broader scale, but also for many endemics that contracted and expanded their ranges within refugial areas. Understanding the evolutionary history of refugial endemics is especially important in the case of endangered species to recognize the origins of...Barbosa, S ; Paupério, J ; Herman, Jeremy S ; Ferreira, C M ; Pita, R …
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Journal article
Species identification of voles and lemmings from Late Pleistocene deposits in Pin Hole Cave (Creswell Crags, UK) using collagen fingerprinting
Microfaunal remains are commonly used as palaeoenvironmental proxies and have been proposed as a means to identify relative ages of Late Quaternary deposits through biostratigraphy (i.e., utilising ‘Mammal Assemblage Zones’). However, assemblages of faunal remains can include a diverse range of taxa which are often difficult to distinguish using morphological...