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2024
Journal article
Mitochondrial genetic variation in long-eared hedgehogs, Hemiechinus auritus, from the Anatolian Peninsula and Cyprus
Mitochondrial genetic variation was examined in long-eared hedgehogs, , from the Anatolian Peninsula, the adjacent island of Cyprus and from Azerbaijan. These data were compared with those available from other parts of the species’ range in North Africa and Asia. Two distinct cytochrome- lineages are present in Anatolia, one of...Özmen, Medine ; Demirtaş, Sadık ; Herman, Jeremy S ; Gündüz, İslam
Anatolia , cytochrome-b, Hemiechinus, Cyprus, and Hemiechinus auritus calligoni
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2023
Journal article
Skull morphology of bottlenose dolphins worldwide and patterns of adaptation between coastal and offshore environments
The morphological differentiation between coastal and offshore ecotypes of bottlenose dolphins (genus ) has been researched since the 1960s, particularly in (Montagu, 1821), although most morphological studies have focused on localized populations. Therefore, it is unclear how patterns observed in these individual populations integrate within the global morphological variation. Here...Oxford‐Smith, N ; Ruta, M ; Gao, A ; Viaud‐Martinez, K A ; Sabin, R …
ecotype , dolphin , offshore , adaptation , biogeography , Tursiops truncatus, coastal , and skull morphology
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2023
Journal article
Pests or prey? Micromammal species within an ancient anthropic environment at the Norse settlement site of Tuquoy (Westray, Orkney)
Micromammals, like rodents and shrews, adapt rapidly to take advantage of new food sources, habitats and ecological niches, frequently thriving in anthropogenic environments. Their remains, often retrieved during archaeological investigations, can be a valuable source of information about the past environmental conditions as well as interspecies interactions and human activity....Romaniuk, Andrzej A ; Troalen, Lore G ; Bendrey, Robin ; Herman, Jeremy S ; Owen, Olwyn …
commensalism, introductions, Orkney, micromammal, archaeology, and predation
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2023
Journal article
Seasonal Adaptation: Geographic Photoperiod–Temperature Patterns Explain Genetic Variation in the Common Vole Tsh Receptor
The vertebrate photoperiodic neuroendocrine system uses the photoperiod as a proxy to time the annual rhythms in reproduction. The thyrotropin receptor (TSHR) is a key protein in the mammalian seasonal reproduction pathway. Its abundance and function can tune sensitivity to the photoperiod. To investigate seasonal adaptation in mammals, the hinge... -
2023
Journal article
The prevalence of vestigial teeth in two beaked whale species from the North Atlantic
Beaked whales, Family Ziphiidae, occur in deep offshore and oceanic seas, where they are very difficult to study, so that much of our knowledge about them is derived from stranded animals. Most beaked whales (e.g., genera and ) have only one pair of mandibular teeth. A reduced dentition is widely...Kitchener, Andrew C ; Herman, Jeremy S ; Doeschate, Mariel ten ; Davison, Nicholas J ; Brownlow, Andrew …
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2022
Journal article
Discrimination of the sister hedgehog species Erinaceus concolor and E. roumanicus (Erinaceomorpha: Mammalia): a geometric morphometric approach
This study investigates skull variation between the two closely related hedgehog species, Erinaceus concolor and E. roumanicus by using geometric morphometric analyses based on 2-dimensional landmarks. For this purpose, a total of 68 specimens were evaluated: 54 E. concolor and 14 E. roumanicus. The results of PCA, ANOVA and MANOVA...Demirtaş, Sadik ; Gündüz, Islam ; Herman, Jeremy S
dorsal cranium, Erinaceus, mandible, geometric morphometric, Turkey, and shape variation
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2021
Journal article
Parasitic nematodes of the genus Syphacia Seurat, 1916 infecting Cricetidae in the British Isles: the enigmatic status of Syphacia nigeriana
Oxyurid nematodes ( spp.) from bank ( and field/common ( spp.) voles, from disparate geographical sites in the British Isles, were examined morphologically and genetically. The genetic signatures of 118 new isolates are provided, based primarily on the rDNA internal transcribed spacers (ITS1-5.8S-ITS2) region and for representative isolates also on... -
2020
Journal article
Combined visual and biochemical analyses confirm depositor and diet for Neolithic coprolites from Skara Brae
Coprolites (fossilized faeces) can provide valuable insights into species’ diet and related habits. In archaeozoological contexts, they are a potential source of information on human-animal interactions as well as human and animal subsistence. However, despite a broad discussion on coprolites in archaeology, such finds are rarely subject to detailed examination... -
2020
Journal article
Genetic structure in Orkney island mice: isolation promotes morphological diversification
Following human occupation, the house mouse has colonised numerous islands, exposing the species to a wide variety of environments. Such a colonisation process, involving successive founder events and bottlenecks, may either promote random evolution or facilitate adaptation, making the relative importance of adaptive and stochastic processes in insular evolution difficult...Chevret, Pascale ; Hautier, Lionel ; Ganem, Guila ; Herman, Jeremy S ; Agret, Sylvie …
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2020
Journal article
First record of True’s beaked whale, Mesoplodon mirus, in Britain
A female beaked whale, Family Ziphiidae, was reported as stranded on 29th January 2020 at Kearvaig Bay, Sutherland, Scotland. Examination of its skull confirms that this is the first recorded stranding of True’s beaked whale, Mesoplodon mirus, in Britain.Kitchener, Andrew C ; Georg , Hantke ; Herman, Jeremy S ; ten Doeschate, Mariel ; Brownlow, Andrew C
skull, stranding, Ziphiidae, Mesoplodon mirusy, and pathology
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2019
Journal article
The Anatolian glacial refugium and human-mediated colonization: a phylogeographical study of the stone marten (Martes foina) in Turkey
The Anatolian Peninsula, comprising most of modern Turkey, is situated at the junction of Europe, the Middle East and Asia. Together with its complex geomorphological and climatic history, this has given rise to a rich fauna and flora, which exhibits a wide range of historical biogeographical patterns. The stone marten...Arslan, Yağmur ; Demi̇rtaş, Sadik ; Herman, Jeremy S ; Pustilnik, Jeremy D ; Searle, Jeremy B …
glacial refugium, mitochondrial DNA, phylogeography, Anatolia, and FGB7
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2019
Journal article
Glacial cycles drive rapid divergence of cryptic field vole species
Understanding the factors that contribute to the generation of reproductively isolated forms is a fundamental goal of evolutionary biology. Cryptic species are an especially interesting challenge to study in this context since they lack obvious morphological differentiation that provides clues to adaptive divergence that may drive reproductive isolation. Geographical isolation... -
2019
Journal article
Species identification of Late Pleistocene bat bones using collagen fingerprinting
Bats form the second most diverse mammalian order (Chiroptera), after rodents, and vary widely in their physiology and ecology. Those species that live in temperate climates are generally insectivorous and nocturnal or crepuscular, sheltering in tree hollows, caves, or buildings during the day. They are potentially valuable ecological indicators, due...Buckley, Michael ; Herman, Jeremy S
collagen, Chiroptera, ancient bats, caves, hibernation, and fingerprinting
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Journal article
Genetic variation in field voles (Microtus agrestis) from the British Isles: selective sweeps or population bottlenecks?
The Eurasian field vole (Microtus agrestis) comprises three evolutionarily significant units (ESUs). The northern ESU is found at higher latitudes across the western Palaearctic region and includes six, largely allopatric, mitochondrial DNA lineages that were derived from population bottlenecks. One of these lineages is found in southern Britain and nearby...Herman, Jeremy S ; Stojack, Joanna ; Paupério, Joana ; Jaarola, M ; Wojcik, J M …
Y-chromosome, cytochromeb, selection, post-glacial colonization, population bottleneck, and microsatellite
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2018
Journal article
Cyprus as an ancient hub for house mice and humans
Aim The distribution of the western house mouse (Mus musculus domesticus) around the world has been strongly influenced by the movement of humans. The close association between the house mouse and human phylogeography has been primarily studied in the peripheral distribution of the species. Here, we inferred the complex colonization...García‐Rodríguez, Oxala ; Andreou, Demetra ; Herman, Jeremy S ; Mitsainas, George P ; Searle, Jeremy B …
house mouse, phylogeography, mtDNA, human, bioproxy, and Cyprus
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2011
Journal article
Post-glacial partitioning of mitochondrial genetic variation in the field vole
Genetic markers are often used to examine population history. There is considerable debate about the behaviour of molecular clock rates around the population-species transition. Nevertheless, appropriate calibration is critical to any inference regarding the absolute timing and scale of demographic changes. Here, we use a mitochondrial cytochrome b gene genealogy,...Herman, Jeremy S ; Searle, Jeremy B
Younger Dryas, gene genealogy, molecular clock, phylogeography, Microtus agrestis, and population history
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2009
Journal article
Of mice and (Viking?) men: phylogeography of British and Irish house mice
The west European subspecies of house mouse (Mus musculus domesticus) has gained much of its current widespread distribution through commensalism with humans. This means that the phylogeography of M. m. domesticus should reflect patterns of human movements. We studied restriction fragment length polymorphism (RFLP) and DNA sequence variations in mouse... -
2011
Journal article
Colonization of Ireland: revisiting ‘the pygmy shrew syndrome’ using mitochondrial, Y chromosomal and microsatellite markers
There is great uncertainty about how Ireland attained its current fauna and flora. Long-distance human-mediated colonization from southwestern Europe has been seen as a possible way that Ireland obtained many of its species; however, Britain has (surprisingly) been neglected as a source area for Ireland. The pygmy shrew has long...McDevitt, A D ; Vega, R ; Rambau, Ramugondo V ; Yannic, G ; Herman, Jeremy S …
phylogeography, cytochrome b, British Isles, human introduction, Sorex minutus, and range expansion
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2012
Journal article
First records of the pygmy sperm whale, Kogia breviceps, in Scotland
The pygmy sperm whale, Kogia breviceps, is a poorly known cetacean species, which has been recorded rarely in the British Isles (Leaper and Evans, 2008). It is an oceanic species that inhabits tropical to warmer temperate waters worldwide (Caldwell and Caldwell, 1989). In the North Atlantic it strands reasonably commonly...Kitchener, Andrew C ; Herman, Jeremy S ; Reid, R J ; Anderson, N
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2012
Journal article
Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia
Species are generally described from morphological features, but there is growing recognition of sister forms that show substantial genetic differentiation without obvious morphological variation and may therefore be considered 'cryptic species'. Here, we investigate the field vole (Microtus agrestis), a Eurasian mammal with little apparent morphological differentiation but which, on...Pauperio, J ; Herman, Jeremy S ; Melo-Ferraira, J ; Jaarola, M ; Alves, P C …
species tree, demography, cryptic species, phylogeography, and Microtus agrestis
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2012
Journal article
Climate and refugial origin influence the mitochondrial lineage distribution of weasels (Mustela nivalis) in a phylogeographic suture zone
Overarching trends can be seen in European mammalian phylogeography, yet it is clear that species responded differently depending on adaptations to past environments. We built upon previous work on the phylogeography of weasels (Mustela nivalis) in Europe by using well-preserved museum specimens from a proposed phylogeographic suture zone. The complete...McDevitt, Allan D ; Zub, Karol ; Kawalko, Agata ; Oliver, Matthew K ; Herman, Jeremy S …
adaptation, phylogeography, cytochrome b, museum specimens, and Carpathian refugium
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2018
Journal article
Molecular confirmation of Hymenolepis hibernia in field mice (Apodemus sylvaticus) from St Kilda has potential to resolve a host-parasite relationship
Insular wildlife populations provide opportunities to examine biological questions in systems that are relatively closed and potentially tractable, striking examples being the long-term studies of ecology and evolution in the red deer and feral sheep populations on the Hebridean islands of Rum and St Kilda. In the case of parasitology,... -
2015
Journal article
Corrigendum to “Species identification of archaeological marine mammals using collagen fingerprinting” [YJASC 41 (2014) 631–641]
Throughout human history, coastal and marine resources have been a vital part of human subsistence. As a result archaeological faunal assemblages from coastal sites often contain large quantities of skeletal remains indicative of human interaction with marine mammals. However, these are often hard to identify due to a unique combination...Buckley, M ; Fraser, S ; Herman, Jeremy S ; Melton, N D ; Mulville, J …
Proteomics, Cetaceans, Marine mammals, Pinnipeds, Archaeological collagen, ZooMS, and Species identification
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2018
Journal article
Postglacial recolonization and Holocene diversification of Crocidura suaveolens (Mammalia, Soricidae) on the north-western fringe of the European continent
Phenotypic variation was characterized in 187 modern and archaeological specimens of the lesser white-toothed shrew (Crocidura suaveolens), obtained from both insular and continental European locations. Geometric morphometric methods were used to quantify variation in size and shape of the mandible. The phenotypic distance between populations, and the influence of several... -
2018
Journal article
Species identification of voles and lemmings from Late Pleistocene deposits in Pin Hole Cave (Creswell Crags, UK) using collagen fingerprinting
Microfaunal remains are commonly used as palaeoenvironmental proxies and have been proposed as a means to identify relative ages of Late Quaternary deposits through biostratigraphy (i.e., utilising ‘Mammal Assemblage Zones’). However, assemblages of faunal remains can include a diverse range of taxa which are often difficult to distinguish using morphological... -
2009
Journal article
The Celtic fringe of Britain: insights from small mammal phylogeography.
Recent genetic studies have challenged the traditional view that the ancestors of British Celtic people spread from central Europe during the Iron Age and have suggested a much earlier origin for them as part of the human recolonization of Britain at the end of the last glaciation. Here we propose...Searle, Jeremy B ; Kotlik, Petr ; Rambau, Ramugondo V ; Markova, Silvia ; Herman, Jeremy S …
mitochondrial DNA, Myodes glareolus, Sorex minutus, Colonization history, and Microtus agrestis
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2012
Journal article
Climate and refugial origin influence the mitochondrial lineage distribution of weasels (Mustela nivalis) in a phylogeographic suture zone
Overarching trends can be seen in European mammalian phylogeography, yet it is clear that species responded differently depending on adaptations to past environments. We built upon previous work on the phylogeography of weasels (Mustela nivalis) in Europe by using well-preserved museum specimens from a proposed phylogeographic suture zone. The complete...McDevitt, A D ; Zub, K ; Kawalko, Agato ; Oliver, M K ; Herman, Jeremy S …
adaptation, phylogeography, cytochrome b, museum specimens, and Carpathian refugium
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2015
Journal article
Osteoarthritis of the temporo-mandibular joint in free-living Soay sheep on St Kilda
Osteoarthritis (OA) is a common degenerative disease of synovial joints with the potential to cause pathology and welfare issues in both domestic and wild ruminants. Previous work has identified OA of the elbow joint in domestic sheep, but the prevalence of OA of the jaw and in particular the temporomandibular...Stojak, J ; McDevitt, A D ; Herman, Jeremy S ; Searle, Jeremy B ; Wojcik, J M
Radiography, Sheep, Temporo-mandibular joints, St Kilda, and Osteoarthritis
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2017
Journal article
Endemic species may have complex histories: within-refugium phylogeography of an endangered Iberian vole
Glacial refugia protected and promoted biodiversity during the Pleistocene, not only at a broader scale, but also for many endemics that contracted and expanded their ranges within refugial areas. Understanding the evolutionary history of refugial endemics is especially important in the case of endangered species to recognize the origins of...Barbosa, S ; Paupério, J ; Herman, Jeremy S ; Ferreira, C M ; Pita, R …
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2016
Journal article
Between the Balkans and the Baltic: Phylogeography of a common vole Mitochondrial DNA lineage limited to Central Europe
The common vole (Microtus arvalis) has been a model species of small mammal for studying end-glacial colonization history. In the present study we expanded the sampling from central and eastern Europe, analyzing contemporary genetic structure to identify the role of a potential ‘northern glacial refugium’, i.e. a refugium at a...Stojak, Joanna ; McDevitt, Allan D ; Herman, Jeremy S ; Kryštufek, Boris ; Uhlíková, Jitka …
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2016
Journal article
Post-glacial colonization of eastern Europe by the wood mouse, Apodemus sylvaticus: evidence of a northern refugium and dispersal with humans
The wood mouse Apodemus sylvaticus is an opportunistic rodent that is found throughout most of the European mainland. It is present on many islands around the margins of the continent and in northern Africa. The species has been the subject of previous phylogeographical studies, although these have focussed on the... -
2016
Journal article
Rodents: food or pests in Neolithic Orkney
Rodents have important effects on contemporary human societies, sometimes providing a source of food but more often as agricultural pests, or as vectors and reservoirs of disease. Skeletal remains of rodents are commonly found in archaeological assemblages from around the world, highlighting their potential importance to ancient human populations. However,...Romaniuk, Andrzej A ; Shepherd, Alexandra N ; Clarke, David V ; Sheridan, J A ; Fraser, Sheena …
Rodentia, Microtus arvalis, human subsistence, archaeology, and animal osteology
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2016
Journal article
R2d2 drives selfish sweeps in the house mouse
A selective sweep is the result of a strong positive selection driving newly occurring or standing genetic variants to fixation, and can dramatically alter the pattern and distribution of allelic diversity in a population. Population-level sequencing data have enabled discoveries of selective sweeps associated with genes involved in recent adaptions...Didion, J P ; Morgan, A P ; Yadgary, L ; Bell, T A ; McMullan, R C …
house mouse, selfish genes, Meiotic drive, selective sweep, and R2d2
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2015
Journal article
Post-glacial colonization of eastern Europe by small mammals that survived in the Carpathian refugium: evidence from mitochondrial DNA of the common vole
There is now considerable evidence for the survival of temperate species within glacial refugia that were situated at relatively high latitudes, notably the Carpathian Basin and Dordogne region in Europe. However, the prevalence of fossil remains in such locations is rarely matched by molecular evidence for their contribution to subsequent...Stojak, Joanna ; McDevitt, Allan D ; Herman, Jeremy S ; Searle, Jeremy B ; Wójcik, Jan M
phylogeography, glacial refugia, cytochrome b, museum specimens, Last Glacial Maximum, and small mammals
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2014
Journal article
Land-bridge calibration of molecular clocks and the post-glacial colonization of Scandinavia by the Eurasian field vole Microtus agrestis
Phylogeography interprets molecular genetic variation in a spatial and temporal context. Molecular clocks are frequently used to calibrate phylogeographic analyses, however there is mounting evidence that molecular rates decay over the relevant timescales. It is therefore essential that an appropriate rate is determined, consistent with the temporal scale of the...Herman, Jeremy S ; McDevitt, Allan D ; Kawalko, Agato ; Jaarolo, Maarit ; Wójcik, J M …
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2014
Journal article
Species identification of archaeological marine mammals using collagen fingerprinting
Throughout human history, coastal and marine resources have been a vital part of human subsistence. As a result archaeological faunal assemblages from coastal sites often contain large quantities of skeletal remains indicative of human interaction with marine mammals. However, these are often hard to identify due to a unique combination...Buckley, M ; Fraser, S ; Herman, Jeremy S ; Melton, N D ; Mulville, J …
Proteomics, Cetaceans, Marine mammals, Pinnipeds, Archaeological collagen, ZooMS, and Species identification