Search Constraints
Search Results
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Journal article
Identification of constrained sequence elements across 239 primate genomes
Noncoding DNA is central to our understanding of human gene regulation and complex diseases , and measuring the evolutionary sequence constraint can establish the functional relevance of putative regulatory elements in the human genome . Identifying the genomic elements that have become constrained specifically in primates has been hampered by... -
Journal article
Multiple skeletons of Rhynchaeites from the London Clay reveal the osteology of early Eocene ibises (Aves, Threskiornithidae)
We describe a new species of from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK), which is represented by a partial skeleton comprising a skull and most major postcranial bones. Multiple further partial skeletons are assigned to sp. and include skeletal elements that are rarely preserved in Paleogene birds....Mayr, Gerald ; Kitchener, Andrew C
Walton-on-the-Naze, Rhynchaeites , Fossil birds , Aves , and Character evolution
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Journal article
Getting to the Meat of It: The Effects of a Captive Diet upon the Skull Morphology of the Lion and Tiger
Zoo animals are crucial for conserving and potentially re-introducing species to the wild, yet it is known that the morphology of captive animals differs from that of wild animals. It is important to know how and why zoo and wild animal morphology differs to better care for captive animals and...Cooper, David M ; Yamaguchi, Nobuyuki ; Macdonald, David W ; Patterson, Bruce D ; Salkina, Galina P …
Panthera Leo , Panthera Tigris , Diet, Captive Animals, Shape, Wild Animal , Meat , and Skull
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Journal article
Complex Evolutionary History With Extensive Ancestral Gene Flow in an African Primate Radiation
Understanding the drivers of speciation is fundamental in evolutionary biology, and recent studies highlight hybridization as an important evolutionary force. Using whole-genome sequencing data from 22 species of guenons (tribe Cercopithecini), one of the world's largest primate radiations, we show that rampant gene flow characterizes their evolutionary history and identify...Jensen, Axel ; Swift, Frances ; de Vries, Dorien ; Beck, Robin M D ; Kuderna, Lukas F K …
ancient hybridization, phylogenomics, mammalian radiation, guenon, speciation, and evolutionary genomics
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Journal article
A Computed Tomographic Study of the Premolar Teeth of Babyrousa spp.
A photographic and computed tomography (CT) scanning study was carried out on the premolar teeth of 18 adult male Babyrousa babyrussa skulls, 10 skulls of Babyrousa celebensis, including 6 adult males, 1 adult female, 1 subadult male, 1 subadult female, and 1 juvenile male. The occlusal morphology of the permanent...Macdonald, Alastair A ; Ziehmer, Bianca ; Kitchener, Andrew C ; Gelang, Magnus ; Åblad, Björn …
anatomy, Babyrousa spp., wild pig , tooth , root, babirusa , and root canal
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Journal article
The genome of the black-footed cat: Revealing a rich natural history and urgent conservation priorities for small felids
Habitat degradation and loss of genetic diversity are common threats faced by almost all of today’s wild cats. Big cats, such as tigers and lions, are of great concern and have received considerable conservation attention through policies and international actions. However, knowledge of and conservation actions for small wild cats...Yuan, Jiaqing ; Kitchener, Andrew C ; Lackey, Laurie Bingaman ; Sun, Ting ; Jiangzuo, Qigao …
INTROGRESSION , CONSERVATION , BLACK-FOOTED CAT, and INBREEDING
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Journal article
Limited historical admixture between European wildcats and domestic cats
Domestic cats were derived from the Near Eastern wildcat (Felis lybica), after which they dispersed with people into Europe. As they did so, it is possible that they interbred with the indigenous population of European wildcats (Felis silvestris). Gene flow between incoming domestic animals and closely related indigenous wild species...Jamieson, Alexandra ; Carmagnini, Alberto ; Howard-McCombe, Jo ; Doherty, Sean ; Hirons, Alexandra …
ancient DNA, cats, hybridization , and domestication
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Journal article
How genomic insights into the evolutionary history of clouded leopards inform their conservation
Clouded leopards ( spp.), a morphologically and ecologically distinct lineage of big cats, are severely threatened by habitat loss and fragmentation, targeted hunting, and other human activities. The long-held poor understanding of their genetics and evolution has undermined the effectiveness of conservation actions. Here, we report a comprehensive investigation of...Yuan, Jiaqing ; Wang, Guiqiang ; Zhao, Le ; Kitchener, Andrew C ; Sun, Ting …
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Journal article
Genetic swamping of the critically endangered Scottish wildcat was recent and accelerated by disease
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Journal article
The mitochondrial DNA diversity of captive ruffed lemurs (Varecia spp.): implications for conservation
Ruffed lemurs ( and ) are categorized as Critically Endangered on the IUCN Red List, and genetic studies are needed for assessing the conservation value of captive populations. Using 280 mitochondrial DNA (mtDNA) D-loop sequences, we studied the genetic diversity and structure of captive ruffed lemurs in Madagascar, Europe and...Vega, Rodrigo ; Hopper, Jane ; Kitchener, Andrew C ; Catinaud, Jérôme ; Roullet, Delphine …
Biodiversity, diversity, Lemuridae, genetic, primates, conservation, and Madagascar
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Journal article
Palaeogenomic Evidence for the Long-Term Reproductive Isolation Between Wild and Domestic Cats
Domestic cats were derived from the Near Eastern wildcat (Felis lybica), after which they dispersed with people into Europe. As they did so, it is possible that they interbred with the indigenous population of European wildcats (Felis silvestris). Gene flow between incoming domestic animals and closely related indigenous wild species...Jamieson, Alexandra ; Carmagnini, Alberto ; Howard-McCombe, Jo ; Doherty, Sean ; Hirons, Alexandra …
domestication, palaeogenomics, and cats
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Journal article
Early Eocene fossils elucidate the evolutionary history of the Charadriiformes (shorebirds and allies)
We report charadriiform and charadriiform-like birds from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). A partial skeleton of a small modern-type charadriiform is described as a new species, n. gen. n. sp., and most closely resembles taxa of the Charadrii (plovers, stilts, oystercatchers, and other “wader-like” shorebirds). Affinities...Mayr, Gerald ; Kitchener, Andrew C
charadriiform bird, Walton-on-the-Naze, fossil record, early Paleogene , and Eocene London Clay
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Journal article
Assessing the identity of rare historical museum specimens of the extinct blue antelope (Hippotragus leucophaeus) using an ancient DNA approach
The blue antelope or bluebuck ( ) is an extinct species of antelope that lived in South Africa until ca. 1799–1800. Disappearing only 34 years after it was described, it was the first large African mammal species to have become extinct in recent times. Therefore, current scientific knowledge of the... -
Journal article
On the “screamer-like” birds from the British London Clay: An archaic anseriform-galliform mosaic and a non-galloanserine “barb-necked” species of Perplexicervix
We revisit recently described putative anseriform birds from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). Phylogenetically relevant skeletal elements of Danielsavis nazensis Houde et al., 2023 are reported that were omitted from the original description, including the pterygoids and palatines. We detail that anseriform affinities of D. nazensis...Mayr, Gerald ; Carrió, Vicen ; Kitchener, Andrew C
Aves, new family, Walton-on-the-Naze, new species, and fossil birds
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Journal article
Stable isotope ecology and interspecific dietary overlap among dolphins in the Northeast Atlantic
Dolphins are mobile apex marine predators. Over the past three decades, warm-water adapted dolphin species (short-beaked common and striped) have expanded their ranges northward and become increasingly abundant in British waters. Meanwhile, cold-water adapted dolphins (white-beaked and Atlantic white-sided) abundance trends are decreasing, with evidence of the distribution of white-beaked...Plint, Tessa ; ten Doeschate, Mariel T I ; Brownlow, Andrew C ; Davison, Nicholas J ; Hantke, Georg …
stable isotope, Northeast Atlantic, Scotland, dolphin, dietary overlap, and niche
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Journal article
New species from the early Eocene London Clay suggest an undetected early Eocene diversity of the Leptosomiformes, an avian clade that includes a living fossil from Madagascar
We report the first records of the leptosomiform taxon from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). Two species could be distinguished, one of which is described as , sp. nov. (the other is classified as sp.). We furthermore describe two small leptosomiform-like birds from Walton-on-the-Naze, , gen....Mayr, Gerald ; Kitchener, Andrew C
Waltonavis, gen. nov. , Ypresian , Walton-on-the-Naze, Lutavis, gen. nov. , fossil birds , Aves , and Plesiocathartes insolitipes, sp. nov.
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Journal article
Describing whisker morphology of the Carnivora
One of the largest ecological transitions in carnivoran evolution was the shift from terrestrial to aquatic lifestyles, which has driven morphological diversity in skulls and other skeletal structures. In this paper, we investigate the association between those lifestyles and whisker morphology. However, comparing whisker morphology over a range of species...Dougill, Gary ; Brassey, Charlotte A ; Starostin, Eugene L ; Andrews, Hayley ; Kitchener, Andrew C …
mechanoreception , curvature , touch , aquatic , and vibrissae
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Journal article
Narrow-beaked trogons from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK)
We describe multiple partial skeletons of a new trogon species from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK), which are among the oldest fossils of the Trogoniformes. , gen. et sp. nov. has a much narrower and more gracile beak than extant trogons, which denotes different ecological attributes...Mayr, Gerald ; De Pietri, Vanesa L ; Kitchener, Andrew C
Eotrogon stenorhynchus, gen. et sp. nov. , Phylogeny, Fossil birds , Paratrogon gallicus , Aves , and Evolution
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Journal article
A global catalog of whole-genome diversity from 233 primate species
The rich diversity of morphology and behavior displayed across primate species provides an informative context in which to study the impact of genomic diversity on fundamental biological processes. Analysis of that diversity provides insight into long-standing questions in evolutionary and conservation biology and is urgent given severe threats these species...Kuderna, Lukas F K ; Gao, Hong ; Janiak, Mareike C ; Kuhlwilm, Martin ; Orkin, Joseph D …
evolutionary and conservation biology, primates, and genomic diversity study
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Journal article
The landscape of tolerated genetic variation in humans and primates
Personalized genome sequencing has revealed millions of genetic differences between individuals, but our understanding of their clinical relevance remains largely incomplete. To systematically decipher the effects of human genetic variants, we obtained whole-genome sequencing data for 809 individuals from 233 primate species and identified 4.3 million common protein-altering variants with...Gao, Hong ; Hamp, Tobias ; Ede, Jeffrey ; Schraiber, Joshua G ; McRae, Jeremy …
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Journal article
Historical Mitogenomic Diversity and Population Structuring of Southern Hemisphere Fin Whales
Fin whales Balaenoptera physalus were hunted unsustainably across the globe in the 19th and 20th centuries, leading to vast reductions in population size. Whaling catch records indicate the importance of the Southern Ocean for this species; approximately 730,000 fin whales were harvested during the 20th century in the Southern Hemisphere... -
Journal article
Continued survival of the elusive Seram orange melomys (Melomys fulgens)
Many poorly-known small mammals have remained undetected for decades, including , a distinctive orange murid from Seram, Indonesia, that has been unrecorded since 1920. We report previously undocumented specimens of collected in 1993 and 1994, and local ecological knowledge from 2017 including descriptions and recent sightings, providing strong indirect evidence...Turvey, Samuel T ; Jeffree, Timothy E ; Macdonald, Alastair A ; Leus, Kristin ; Kennerley, Rosalind J …
species rediscovery, local ecological knowledge, lost species, extinction, and Indonesia
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Journal article
A new fossil from the London Clay documents the convergent origin of a “mousebird-like” tarsometatarsus in an early Eocene near-passerine bird
We describe a partial skeleton of a small bird from the lower Eocene London Clay of Walton-on-the-Naze (Essex, UK), which shows close affinities to two phylogenetically controversial early Paleogene taxa, Morsoravis sedilis (lower Eocene of Denmark) and Pumiliornis tessellatus (lower/middle Eocene of Germany). Our phylogenetic analysis supports a clade including...Mayr, Gerald ; Kitchener, Andrew C
Aves, Walton-on-the-Naze, Sororavis solitarius, Eocene, UK, and evolution
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Journal article
The prevalence of vestigial teeth in two beaked whale species from the North Atlantic
Beaked whales, Family Ziphiidae, occur in deep offshore and oceanic seas, where they are very difficult to study, so that much of our knowledge about them is derived from stranded animals. Most beaked whales (e.g., genera and ) have only one pair of mandibular teeth. A reduced dentition is widely...Kitchener, Andrew C ; Herman, Jeremy S ; Doeschate, Mariel ten ; Davison, Nicholas J ; Brownlow, Andrew …
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Journal article
Range-wide whole-genome resequencing of the brown bear reveals drivers of intraspecies divergence
Population-genomic studies can shed new light on the effect of past demographic processes on contemporary population structure. We reassessed phylogeographical patterns of a classic model species of postglacial recolonisation, the brown bear ( ), using a range-wide resequencing dataset of 128 nuclear genomes. In sharp contrast to the erratic geographical...de Jong, Menno J ; Niamir, Aidin ; Wolf, Magnus ; Kitchener, Andrew C ; Lecomte, Nicolas …
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Journal article
Psittacopedids and zygodactylids: The diverse and species-rich psittacopasserine birds from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK)
The Daniels collection of fossil birds from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK) contains multiple specimens of the Psittacopedidae and Zygodactylidae, which are here for the first time studied in detail. The Psittacopedidae include Parapsittacopes bergdahli, Psittacomimus eos, gen. et sp. nov., ?Psittacopes occidentalis, sp. nov., and...Mayr, Gerald ; Kitchener, Andrew C
Psittacopasseres, evolution, fossil birds, Aves, and systematics
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Journal article
First recorded stranding of a short-finned pilot whale, Globicephala macrorhynchus, in Britain
A male pilot whale, Globicephala sp., was reported as a live stranding on 1st March 2012 at Hazelbeach, near Neyland, Pembrokeshire. It was euthanased and its skull was recovered during an onsite necropsy. Examination of the skull and contemporary photographs of the stranded animal confirm that this is the first...Kitchener, Andrew C ; Hantke, Georg ; Penrose, R S ; Perkins, M W ; Deaville, R
Globicephala melas, Delphinidae, skull, and Globicephala macrorhynchus
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Journal article
When did Alexander Philipp Maximilian, Prinz zu Wied-Neuwied, first describe Felis macroura?
The margay, Leopardus wiedii Schinz, 1821, is a Neotropical small spotted cat, whose nomenclatural history has long been confused (Thomas 1903; Pocock 1917; Allen 1919). This confusion began with Georges-Louis Leclerc, Comte de Buffon, in Histoire naturelle, générale et particulière, avec la description du Cabinet du roi published in 1765,...Kitchener, Andrew C ; Sanderson, James G
Leopardus macrourus, margay, Leopardus wiedii, wild cat, Heinrich Rudolf Schinz, Reise nach Brasilien, and Felis wiedii
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Journal article
Biogeography in the deep: Hierarchical population genomic structure of two beaked whale species
The deep sea is the largest ecosystem on Earth, yet little is known about the processes driving patterns of genetic diversity in its inhabitants. Here, we investigated the macro- and microevolutionary processes shaping genomic population structure and diversity in two poorly understood, globally distributed, deep-sea predators: Cuvier’s beaked whale (Ziphius... -
Journal article
Phenotypic plasticity determines differences between the skulls of tigers from mainland Asia
Tiger subspecific taxonomy is controversial because of morphological and genetic variation found between now fragmented populations, yet the extent to which phenotypic plasticity or genetic variation affects phenotypes of putative tiger subspecies has not been explicitly addressed. In order to assess the role of phenotypic plasticity in determining skull variation,... -
Journal article
Biogeography in the deep: Hierarchical population genomic structure of two beaked whale species
The deep sea is the largest ecosystem on Earth, yet little is known about the processes driving patterns of genetic diversity in its inhabitants. Here, we investigated the macro- and microevolutionary processes shaping genomic population structure and diversity in two poorly understood, globally distributed, deep-sea predators: Cuvier’s beaked whale (Ziphius... -
Journal article
Evidence that Temminck described Felis aurata in 1825, not 1827
The African golden cat, Caracal aurata, ranges from west through central to east Africa and is categorized as Vulnerable on the IUCN Red List of Threatened Species. Coenraad J. Temminck (1778–1858) described Felis aurata (African golden cat) and other new felid species in the fourth of seven monographs collected in... -
Journal article
The expensive-tissue hypothesis may help explain brain-size reduction during domestication
Morphological traits, such as white patches, floppy ears and curly tails, are ubiquitous in domestic animals and are referred to as the ‘domestication syndrome’. A commonly discussed hypothesis that has the potential to provide a unifying explanation for these traits is the ‘neural crest/domestication syndrome hypothesis’. Although this hypothesis has...Lesch, Raffaela ; Kotrschal, Kurt ; Kitchener, Andrew C ; Fitch, W Tecumseh ; Kotrschal, Alexander
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Journal article
Early Eocene fossil illuminates the ancestral (diurnal) ecomorphology of owls and documents a mosaic evolution of the strigiform body plan
We describe a partial skeleton of a fossil owl (Strigiformes) from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). The holotype of Ypresiglaux michaeldanielsi, gen. et sp. nov. is one of the most complete specimens of a Palaeogene owl and elucidates the poorly known ecomorphology of stem group Strigiformes....Mayr, Gerald ; Kitchener, Andrew C
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Journal article
Oldest fossil loon documents a pronounced ecomorphological shift in the evolution of gaviiform birds
We describe a stem group representative of Gaviiformes (loons or divers) from the early Eocene London Clay of Walton-on-the-Naze (Essex, UK). The holotype of Nasidytes ypresianus gen. et sp. nov. is a partial skeleton including the mandible and all major limb bones. The new species is the oldest unambiguously identified...Mayr, Gerald ; Kitchener, Andrew C
Nasidytes ypresianus, Walton-on-the-Naze, Aves, fossil birds, and London Clay
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Journal article
New fossils from the London Clay show that the Eocene Masillaraptoridae are stem group representatives of falcons (Aves, Falconiformes)
The Eocene taxon Masillaraptoridae includes long-legged, raptorial birds, the phylogenetic affinities of which are poorly resolved. Here, fossils from the London Clay of Walton-on-the-Naze (Essex, U.K.) are described, which corroborate the hypothesis that masillaraptorids are stem group representatives of the Falconiformes (falcons). Two partial skeletons are assigned to a new...Mayr, Gerald ; Kitchener, Andrew C
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Journal article
Novel mtDNA haplotypes represented in the European captive population of the Endangered François’ langur (Trachypithecus francoisi)
Assessing the genetic diversity of captive populations of endangered species is key to the successful management of conservation-breeding programs. In this study, we sequenced a 393-bp fragment of the mitochondrial DNA (mtDNA) control region of 23 captive individuals of the Endangered François’ langur ( ) to assess the mtDNA diversity...Farré, Marta ; Johnstone, Cameron ; Hopper, Jane ; Kitchener, Andrew C ; Roos, Christian …
Captive populations, mtDNA , Conservation genetics , and François’ langurs
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Journal article
Expediency of photographs to study the distribution of wildcats in South-west Asia
By compiling a wildcat catalogue of georeferenced digital photographs from Southwest Asia, we investigated the plausibility of phenotypically identifying Felis silvestris caucasica (Caucasian wildcat), Felis lybica ornata (Asiatic wildcat) and Felis lybica lybica (African wildcat) through external phenotypic traits, in order to verify their known distribution, and identify any inconsistencies...Wuest, Dina ; Kitchener, Andrew C ; Ghoddousi, Arash ; Gerngross, Peter ; Barashkova, Anna …
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Journal article
African and Asian leopards are highly differentiated at the genomic level
Leopards are the only big cats still widely distributed across the continents of Africa and Asia. They occur in a wide range of habitats and are often found in close proximity to humans. But despite their ubiquity, leopard phylogeography and population history have not yet been studied with genomic tools....Paijmans, Johanna L A ; Axel, Barlow ; Becker, Matthew S ; Cahill, James ; Fickel, Joerns …
genomes, Panthera pardus, population genomics, historical samples, leopards, and out-of-Africa
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Journal article
Variation in predicted COVID-19 risk among lemurs and lorises
The novel coronavirus SARS-CoV-2, which in humans leads to the disease COVID-19, has caused global disruption and more than 2 million fatalities since it first emerged in late 2019. As we write, infection rates are at their highest point globally and are rising extremely rapidly in some areas due to...Melin, Amanda D ; Orkin, Joseph D ; Janiak, Mareike C ; Valenzeula, Alejandro ; Kuderna, Lukas …
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Journal article
High-quality carnivoran genomes from roadkill samples enable comparative species delineation in aardwolf and bat-eared fox
In a context of ongoing biodiversity erosion, obtaining genomic resources from wildlife is essential for conservation. The thousands of yearly mammalian roadkill provide a useful source material for genomic surveys. To illustrate the potential of this underexploited resource, we used roadkill samples to study the genomic diversity of the bat-eared...Allio, Rémi ; Tilak, Marie-Ka ; Scornavacca, Celine ; Avenant, Nico L ; Kitchener, Andrew C …
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Journal article
Improved diagnosis of foot osteoarthritis in elephants ( elephas maximus, loxodonta africana) using stereoradiography
Diagnosis of foot disease in elephants is challenging. Owing to their large size, the available diagnostic tools and the expense of imaging are diagnostically limiting. Stereoradiography is the preparation of paired radiographs that form a three-dimensional (3D) image when viewed stereoscopically. Clinicians and veterinary students graded osteoarthritis in the feet...Bentley, Charlotte E ; Cracknell, Jonathan M ; Kitchener, Andrew C ; Martinez Pereira, Yolanda ; Pizzi, Romain
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Journal article
Selection preferences for animal species used in bone-tool-manufacturing strategies in KwaZulu-Natal, South Africa
Animal symbolism is a prominent feature of many human societies globally. In some cases, these symbolic attributes manifest in the technological domain, influencing the decision to use the bones of certain animals and not others for tool manufacture. In southern Africa, animals feature prominently in the cosmogenic narratives of both...Bradfield, Justin ; Kitchener, Andrew C ; Buckley, Michael
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Journal article
Abnormal (Hydroxy)proline Deuterium Content Redefines Hydrogen Chemical Mass
Analyzing the δ2H values in individual amino acids of proteins extracted from vertebrates, we unexpectedly found in some samples, notably bone collagen from seals, more than twice as much deuterium in proline and hydroxyproline residues than in seawater. This corresponds to at least 4 times higher δ2H than in any...Gharibi, Hassan ; Chernobrovkin, Alexey L ; Eriksson, Gunilla ; Saei, Amir Ata ; Timmons, Zena …
Biopolymers, Ions, Hydrogen , Peptides , Anatomy, proteins, and isotopes
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Journal article
Genetic examination of historical North Atlantic right whale (Eubalaena glacialis) bone specimens from the eastern North Atlantic: Insights into species history, transoceanic population structure, and genetic diversity
Species monitoring and conservation is increasingly challenging under current climate change scenarios. For the North Atlantic right whale (Eubalaena glacialis) this challenge is heightened by the added effects of complicated and uncertain past species demography. Right whales once had a much wider distribution across the North Atlantic Ocean, although the...Frasier, Brenna A ; Springate, Leah ; Frasier, Timothy R ; Brewington, Seth ; Carruthers, Martin …
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Journal article
Cranial volume and palate length of cats, Felis spp., under domestication, hybridization and in wild populations
Reduced brain size, compared with wild individuals, is argued to be a key characteristic of domesticated mammal species, and often cited as a key component of a putative ‘domestication syndrome’. However, brain size comparisons are often based on old, inaccessible literature and in some cases drew comparisons between domestic animals...Lesch, Raffaela ; Kitchener, Andrew C ; Hantke, Georg ; Kotrschal, Kurt ; Fitch, W Tecumseh
skull, conservation, brain size, wildlife, hybridization, and cranial capacity
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Journal article
The Scientific Name of the Aardwolf is Proteles cristatus
The aardwolf is one of the four members of the family Hyaenidae (order Carnivora). It is referred to as either Proteles cristatus or Proteles cristata in the scientific literature and on animal diversity websites, but only one of these names is correct. In this short note, we seek to rectify...Werdelin, Lars ; Kitchener, Andrew C ; Abramov, Alexei ; Veron, Géraldine ; Do Linh San, Emmanuel
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Journal article
Towards resolving taxonomic uncertainties in wolf, dog and jackal lineages of Africa, Eurasia and Australasia
Successful conservation depends on accurate taxonomy. Currently, the taxonomy of canids in Africa, Eurasia and Australasia is unstable as recent molecular and morphological studies have questioned earlier phenetic classifications. We review available information on several taxa of Old World and Australasian Canis with phylogenetic uncertainties (namely, African jackals, Asian wolves...Krofel, M ; Hatlauf, J ; Bogdanowicz, W ; Campbell, L A D ; Godinho, R …
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Journal article
Dental Anomaly Causing Severe Maxillary Lesions in a Male Sowerby’s Beaked Whale (Mesoplodon bidens Sowerby, 1804)
Sowerby’s beaked whale (Mesoplodon bidens) is a poorly known cetacean species, and much of our current information comes from stranded animals. Herein, we describe a dental anomaly in an adult male stranded in 2019 in the Moray Firth, Scotland. The mandibular teeth (tusks) had erupted so their tips converged towards...Plint, Tessa ; Hantke, Georg ; Schwarz, Tobias ; Kitchener, Andrew C
beaked whale, dental anomaly, maxillary lesions, Mesoplodon bidens, and pathology
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Journal article
A system for designating taxonomic certainty in mammals and other taxa
Taxonomy and systematics are fundamental to the success of conservation actions. A robust and accurate classification of living organisms is vital for understanding biodiversity, using limited resources wisely, prioritising conservation action, and for legal protection and regulation of trade. However, all too often current taxonomies are not based on the...Kitchener, Andrew C ; Hoffmann, Michael ; Yamaguchi, Nobuyuki ; Breitenmoser-Würsten, Christine ; Wilting, Andreas
Taxonomy, Systematics , Conservation , Classification , and Species concepts
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Journal article
First record of True’s beaked whale, Mesoplodon mirus, in Britain
A female beaked whale, Family Ziphiidae, was reported as stranded on 29th January 2020 at Kearvaig Bay, Sutherland, Scotland. Examination of its skull confirms that this is the first recorded stranding of True’s beaked whale, Mesoplodon mirus, in Britain.Kitchener, Andrew C ; Georg , Hantke ; Herman, Jeremy S ; ten Doeschate, Mariel ; Brownlow, Andrew C
skull, stranding, Ziphiidae, Mesoplodon mirusy, and pathology
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Journal article
Investigating infectious disease threats to the recovery of the European polecat in Britain
The European polecat (Mustela putorius) almost became extinct in Britain in the early twentieth century, but populations are now recovering. As seen in other endangered carnivore populations, disease is one potential threat to recovery. This study assessed exposure of wild polecats (n = 149) to three, multi-host pathogens which could limit reproduction...Heald, Kari-Anne ; Millins, Caroline ; Kitchener, Andrew C ; Banyard, Ashley C ; Hantke, Georg …
Mustela putorius , Leptospira , Toxoplasma gondii, and Canine distemper virus
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Journal article
A contribution to the Age-Class Determination of Martes foina Erxleben, 1777 from Turkey (Mammalia: Carnivora)
This study was based on 57 beech marten (Martes foina) specimens collected in Turkey between 1994 and 1998. The specimens were divided into 3 age classes as young, juvenile, and adult on the basis of the morphology of the sagittal and lambdoidal crests, and temporal ridges, relative lengths of the...Albayrak, Irfan ; Özen, Ahmet Selçuk ; Kitchener, Andrew C
skull, Turkey, baculum, and Beech Marten
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Journal article
The taming of the cat
Unlike other domesticated creatures, the house cat contributes little to human survival. Researchers have therefore wondered how and why cats came to live among people. Experts traditionally thought that the Egyptians were the first to domesticate the cat, some 3,600 years ago. But recent genetic and archaeological discoveries indicate that...Driscoll, C A ; Clutton-Brock, Juliet ; Kitchener, Andrew C ; O'Brein, S J
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Journal article
A kingdom in decline: Holocene range contraction of the lion (Panthera leo) modelled with global environmental stratification
Aim We use ecological niche models and environmental stratification of palaeoclimate to reconstruct the changing range of the lion (Panthera leo) during the late Pleistocene and Holocene. Location The modern (early 21st century) range of the lion extends from southern Africa to the western Indian Subcontinent, yet through the... -
Journal article
Intraspecific macroscopic digestive anatomy of ring-tailed lemurs (Lemur catta), including a comparison of frozen and formalin-stored specimens
Digestive tract measurements are often considered species specific, but little information exists on the degree to which they change during ontogeny within a species. Additionally, access to anatomical material from nondomestic species is often limited, with fixed tissues possibly representing the only available source, though the degree to which this...Clauss, Marcus ; Trümpler, Jelscha ; Ackermans, Nicole L ; Kitchener, Andrew C ; Hantke, Georg …
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Journal article
Diffuse Idiopathic Skeletal Hyperostosis in captive gorillas (Gorilla Spp.): Appearance and diagnosis
Diffuse idiopathic skeletal hyperostosis (DISH) is a disorder of unknown cause, in which new bone forms in soft tissues attached to the skeleton. Originally described in humans, in whom it is quite common, it is usually asymptomatic. New bone may completely bridge across joints, especially in the spine. However, it...Livingstone, Brian ; Kitchener, Andrew C ; Hull, Gordon ; Schwarz, Tobias ; Vijayanathan, Sanjay …
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Journal article
Machine learning ATR-FTIR spectroscopy data for the screening of collagen for ZooMS analysis and mtDNA in archaeological bone
Faunal remains from archaeological sites allow for the identification of animal species that enables the better understanding of the relationships between humans and animals, not only from their morphological information, but also from the ancient biomolecules (lipids, proteins, and DNA) preserved in these remains for thousands and even millions of... -
Journal article
Consequences of the misidentification of museum specimens: the taxonomic status of Canis lupaster soudanicus
Researchers are increasingly using museum collections for taxonomy, systematics, phylogenetics, and faunal analyses, and they assume that taxonomic identifications on museum labels are correct. However, identifications may be incorrect or out of date, which could result in false conclusions from subsequent research. A recent geometric morphometrics analysis of skulls of...Kitchener, Andrew C ; Machado, Fabio A ; Hayssen, Virginia ; Moehlman, Patricia D ; Viranta, Suvi
museum, Lupulella adusta, misidentification, Canis lupaster, and taxonomy
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Journal article
Small carnivorans, museums and zoos
Small carnivorans are generally poorly represented in zoos, probably because they are small, mostly nocturnal and solitary hunters. However, there is limited knowledge about the ecology and behaviour of a large number of these and many species are threatened with extinction or their conservation status is poorly known or even...Kitchener, Andrew C
museums , zoo, small carnivoran , research , taxonomy , conservation , collection, anatomy , and biobanking
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Journal article
Morphological and functional variation between isolated populations of British red squirrels (Sciurus vulgaris)
Isolation due to habitat fragmentation can lead to morphological and functional variation between populations, with the effect being well documented in rodents. Here, we investigated whether such morphological variation could be identified between British populations of the Eurasian red squirrel (Sciurus vulgaris). This species was once widespread across Great Britain,... -
Journal article
A mitochondrial genetic divergence proxy predicts the reproductive compatibility of mammalian hybrids
Numerous pairs of evolutionarily divergent mammalian species have been shown to produce hybrid offspring. In some cases, F1 hybrids are able to produce F2s through matings with F1s. In other instances, the hybrids are only able to produce offspring themselves through backcrosses with a parent species owing to unisexual sterility...Allen, Richard ; Ryan, Hannah ; Davis, Brian W ; King, Charlotte ; Frantz, Laurent …
evolution, gene flow, genetic distance, and hybrid
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Journal article
Skull morphology diverges between urban and rural populations of red foxes mirroring patterns of domestication and macroevolution
Human activity is drastically altering the habitat use of natural populations. This has been documented as a driver of phenotypic divergence in a number of wild animal populations. Here, we show that urban and rural populations of red foxes (Vulpes vulpes) from London and surrounding boroughs are divergent in skull...Parsons, K J ; Rigg, Anders ; Conith, A J ; Kitchener, Andrew C ; Harris, S …
Canidae , domestication, developmental bias , contemporary evolution, morphometrics, and urban ecology
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Journal article
Rapid evolution of the primate larynx?
Tissue vibrations in the larynx produce most sounds that comprise vocal communication in mammals. Larynx morphology is thus predicted to be a key target for selection, particularly in species with highly developed vocal communication systems. Here, we present a novel database of digitally modeled scanned larynges from 55 different mammalian...Bowling, Daniel L ; Dunn , Jacob C ; Smaers, Jeroen B ; Garcia, Maxime ; Sato , Asha …
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Journal article
Population fragmentation leads to morpho-functional variation in British red squirrels (Sciurus vulgaris)
It is well-known that population fragmentation and isolation can lead to rapid morphological and functional divergence, with the effect being particularly well-documented in rodents. Here, we investigated whether such a phenomenon could be identified in the Eurasian red squirrel (Sciurus vulgaris), which was once widespread across the majority of Great...Cox, Philip G ; Morris, Philip J R ; Kitchener, Andrew C
Morphological evolution, masticatory biomechanics, Sciuridae, geometric morphometrics, and mechanical advantage
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Journal article
Diets of European polecat Mustela putorius in Great Britain during fifty years of population recovery
Following nineteenth-century declines, polecats Mustela putorius are recolonising Great Britain. Polecat diet relates to two potential risks to recovery. First, rabbits Oryctolagus cuniculus, which are important prey for polecats, have experienced extreme population fluctuations, with near extirpation due to myxomatosis in the 1950s, recovery in 1960s–1990s and declines in 1990s–2010s....Sainsbury, Katherine A ; Shore, Richard F ; Schofield, Henry ; Croose, Elizabeth ; Hantke, Georg …
Polecat, Diet, Species recovery, Rabbits, and Mustela putorius
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Journal article
Applying genomic data in wildlife monitoring: Development guidelines for genotyping degraded samples with reduced single nucleotide polymorphism panels
The genomic era has led to an unprecedented increase in the availability of genome‐wide data for a broad range of taxa. Wildlife management strives to make use of these vast resources to enable refined genetic assessments that enhance biodiversity conservation. However, as new genomic platforms emerge, problems remain in adapting...von Thaden, Alina ; Nowak , Carsten ; Tiesmeyer, Annika ; Reiners, Tobias E ; Lyons, Leslie A …
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Journal article
Range-wide patterns of human-mediated hybridisation in European wildcats
Hybridisation between wild taxa and their domestic congeners is a significant conservation issue. Domestic species frequently outnumber their wild relatives in population size and distribution and may therefore genetically swamp the native species. The European wildcat (Felis silvestris) has been shown to hybridise with domestic cats (Felis catus). Previously suggested...Tiesmeyer, Annika ; Ramos, Luana ; Lucas, José Manuel ; Steyer, Katharina ; Alves, Paulo C …
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Journal article
Twenty years of the tiger feeding pole: review and recommendations
The tiger feeding pole was developed at Glasgow Zoo, UK, more than 20 years ago as a feeding-enrichment device. Since then the adoption of the feeding pole by other zoos for Tigers Panthera tigris and other cats has been slow and sporadic until recent years when many zoos in the...Law, G ; Kitchener, Andrew C
behaviour, feeding, tiger, snow leopard, enrichment, jaguar, lion, welfare, captivity, and hunting
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Journal article
The italian zoological gardens and their role in mammal systematic studies, conservation biology and museum collections
The opportunities offered to scientific research by living mammal collections are generally overlooked in Italy. This paper presents a short historical overview of the scientific investigations done on captive mammals from Italian zoos, especially those concerning taxonomic research. A glimpse of the opportunities offered by zoo specimens for scientific research...Gippoliti, Spartaco ; Kitchener, Andrew C
conservation, zoological gardens, Natural History Museums, and taxonomy
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Journal article
A neotype of the clouded leopard (Neofelis nebulosa Griffith 1821)
Recent research has recognised that the clouded leopard (Neofelis nebulosa) is, in fact, two separate species, which differ markedly with respect to craniodental and pelage morphology and genomic characters. There is confusion about the origin and inaccuracies in the description of the nominal specimen, and the undisputed lack of a...Christiansen, P ; Kitchener, Andrew C
Craniodental morphology, Pelage morphology, Skin, Neotype, Type locality, Skull and mandible, Neofelis nebulosa, and BM1955.1644
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Journal article
Geographical variation in and evolutionary history of the Sunda clouded leopard (Neofelis diardi) (Mammalia: Carnivora: Felidae) with the description of a new subspecies from Borneo
Recent morphological and molecular studies led to the recognition of two extant species of clouded leopards; Neofelis nebulosa from mainland southeast Asia and Neofelis diardi from the Sunda Islands of Borneo and Sumatra, including the Batu Islands. In addition to these new species-level distinctions, preliminary molecular data suggested a genetic...Wilting, A ; Christiansen, P ; Kitchener, Andrew C ; Kemp, Y J M ; Ambu, L …
Taxonomy, Toba volcanic eruption, Sunda shelf, Pleistocene, Holotype, and Biogeography
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Journal article
Oldest known pantherine skull and evolution of the tiger
The tiger is one of the most iconic extant animals, and its origin and evolution have been intensely debated. Fossils attributable to extant pantherine species-lineages are less than 2 MYA and the earliest tiger fossils are from the Calabrian, Lower Pleistocene. Molecular studies predict a much younger age for the...Mazák, J H ; Christiansen, P ; Kitchener, Andrew C
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Journal article
Reconstructing Mammalian Phylogenies: A Detailed Comparison of the Cytochrome b and Cytochrome Oxidase Subunit I Mitochondrial Genes
The phylogeny and taxonomy of mammalian species were originally based upon shared or derived morphological characteristics. However, genetic analyses have more recently played an increasingly important role in confirming existing or establishing often radically different mammalian groupings and phylogenies. The two most commonly used genetic loci in species identification are...Kitchener, Andrew C ; Tobe, Shanan S ; Linacre, Adrian
Sequence databases, Animal phylogenetics, Phylogenetic analysis, Sequence alignment, and Mammals
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Journal article
Detection of Neospora caninum in wild carnivorans in Great Britain
Samples of brain and other tissues were collected from 99 ferrets (Mustela furo), 83 red foxes (Vulpes vulpes), 70 European polecats (Mustela putorius), 65 American mink (Neovison vison), 64 Eurasian badgers (Meles meles) and 9 stoats (Mustela erminea), from around Great Britain. DNA was extracted from approximately 1 g of...Bartley, P M ; Wright, S E ; Zimmer, I A ; Roy, S ; Kitchener, Andrew C …
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Journal article
Finite element modelling versus classic beam theory: comparing methods for stress estimation in a morphologically diverse sample of vertebrate long bones
Classic beam theory is frequently used in biomechanics to model the stress behaviour of vertebrate long bones, particularly when creating intraspecific scaling models. Although methodologically straightforward, classic beam theory requires complex irregular bones to be approximated as slender beams, and the errors associated with simplifying complex organic structures to such...Brassey, Charlotte A ; Margetts, L ; Kitchener, Andrew C ; Withers, P J ; Manning, Phillip L …
cross-sectional asymmetry, biomechanics, curvature, Finite element analysis, and beam theory
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Journal article
Where does the tiger come from? – A robust, molecular technique for simultaneous identification of endangered species and subspecies
The Convention on the International Trade in Endangered Species of Wild Fauna and Flora (CITES) monitors the international trade in endangered animal and plant species; a high profile example is the tiger, Panthera tigris. We report on the application of a SNaPshot multiplex technique to simultaneously identify tiger species and...Kitpipit, Thitika ; Tobe, Shanan S ; Kitchener, Andrew C ; Gill, Peter ; Linacre, Adrian
CITES, Tiger, Subspecies, Mitochondrial DNA, SNaPshot, and SNP
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Journal article
The development and validation of a single SNaPshot multiplex for tiger species and subspecies identification — Implications for forensic purposes
The tiger (Panthera tigris) is currently listed on Appendix I of the Convention on the International Trade in Endangered Species of Wild Fauna and Flora; this affords it the highest level of international protection. To aid in the investigation of alleged illegal trade in tiger body parts and derivatives, molecular...Kitpipit, Thitika ; Tobe, Shanan S ; Kitchener, Andrew C ; Gill, Peter ; Linacre, Adrian
Subspecies, Mitochondrial DNA, SNP, Tiger species, and SNaPshot multiplex kit
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Journal article
Modelling the dynamic biogeography of the wildcat: implications for taxonomy and conservation
There is still no clear consensus on how to relate geographical variation in the morphology and genetics of the globally widespread wildcat Felis silvestris to its taxonomy and systematics. Reconstructing the dynamic biogeography of the wildcat provides insight into how current geographical patterns of morphological and molecular variation may have...Kitchener, Andrew C ; Rees, E.E.
Polytypical species, Dynamic biogeography, Africa, Asia, modelling, Europe, and Felis Silvestris
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Journal article
Testing hypotheses for the function of the carnivoran baculum using finite-element analysis
The high degree of endemism on Sulawesi has previously been suggested to have vicariant origins, dating back to 40 Ma. Recent studies, however, suggest that much of Sulawesi's fauna assembled over the last 15 Myr. Here, we test the hypothesis that more recent uplift of previously submerged portions of land...Brassey, Charlotte A ; Gardiner, James G ; Kitchener, Andrew C
biomechanics, copulation, baculum, finite-element analysis, genitalia, and intromission
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Journal article
How to sex Giant otter Pteronura brasiliensis (Gmelin, 1788) cubs
Sexing living neonate mammals may be difficult as external genitalia may be poorly developed and time may be limited for a detailed examination. Four neonate cubs of the Giant otter Pteronura brasiliensis were examined in order to determine a method to distinguish between the sexes. The distance between anal and...Hantke, Georg ; Kitchener, Andrew C
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Journal article
An archaeological and historical review of the relationship between felids and people.
A review of the archaeological and historical records reveals several lines of evidence that people have had close relationships with felids. Almost 40% of felid species have been tamed on all continents, excluding Europe and Oceania, but only one species was domesticated. However, taming occurred mostly in five felid lineages,...Faure, Eric ; Kitchener, Andrew C
taming, domestication, Felis Silvestris, Felidae, and Roman Empire
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Journal article
Rensching cats and dogs: feeding ecology and fecundity trends explain variation in the allometry of sexual size dimorphism
The tendency for sexual size dimorphism (SSD) to increase with body mass in taxa where males are larger, and to decrease when females are larger, is known as Rensch's rule. In mammals, where the trend occurs, it is believed to be the result of a competitive advantage for larger males,...Johnson, P J ; Noonan, M J ; Kitchener, Andrew C ; Harrington, L A ; Newman, C …
dimorphism, Canidae, allometry, diet, resource dispersion, and Felidae
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Journal article
Synchronous diversification of Sulawesi's iconic artiodactyls driven by recent geological events
The high degree of endemism on Sulawesi has previously been suggested to have vicariant origins, dating back to 40 Ma. Recent studies, however, suggest that much of Sulawesi's fauna assembled over the last 15 Myr. Here, we test the hypothesis that more recent uplift of previously submerged portions of land...Frantz, Laurent A F ; Rudzinski, Anna ; Nugraha, Abang Mansyursyah Surya ; Evin, Allowen ; Burton, James …
geology, Wallacea, evolution, and biogeography
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Journal article
Grey whale (Eschrichtius robustus) in Norwegian waters 2000 years ago
The modern distribution of the grey whale (Eschrichtius robustus) is restricted to the North Pacific Ocean, but during the Holocene it occurred also in the North Atlantic Ocean, perhaps as recently as the 17th century. In the western Atlantic, subfossil bones of 12 specimens of grey whale have previously been...Hufthammer, Anne Karin ; Arntsen, Lena ; Kitchener, Andrew C ; Buckley, M
Ancient proteins, Marine mammal bone identification, and Species identification by collagen fingerprinting
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Journal article
Long-term increase in secondary exposure to anticoagulant rodenticides in European polecats Mustela putorius in Great Britain
As a result of legal protection and population recovery, European polecats (Mustela putorius) in Great Britain are expanding into areas associated with greater usage of second-generation anticoagulant rodenticides (SGARs). We analysed polecat livers collected from road casualties from 2013 to 2016 for residues of five SGARs. We related variation in...Sainsbury, Katherine A ; Shore, Richard F ; Schofield, Henry ; Croose, Elizabeth ; Pereria, M Gloria …
Bromadiolone, Polecat, Brodifacoum, Secondary exposure, Rodenticides, and Difenacoum
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Journal article
Radiographic assessment of the skeletons of Dolly and other clones finds no abnormal osteoarthritis
Our recent report detailing the health status of cloned sheep concluded that the animals had aged normally. This is in stark contrast to reports on Dolly (first animal cloned from adult cells) whose diagnoses of osteoarthritis (OA) at 5½ years of age led to considerable scientific concern and media debate...Corr, S A ; Gardner, D S ; Langley-Hobbs, S ; Ness, M G ; Kitchener, Andrew C …
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Journal article
An assessment of the genetic diversity of the founders of the European captive population of Asian lion (Panthera leo leo), using microsatellite markers and studbook analysis
A European Endangered Species Programme (EEP) was established in the early 1990s, in order to manage a captive population of Asian lions (Panthera leo leo) within European zoos. The founders of this population comprised of nine individuals that originated from a captive population in India. During 2007–2009, 57 lions were...Atkinson, Kirsty E ; Kitchener, Andrew C ; Tobe, Shanan S ; O’Donoghue, P
Genetic variation, Microsatellite, Asian lion, Captive breeding, and Panthera leo
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Journal article
Laparoscopic-assisted insertion of a ventriculoperitoneal shunt in a rescued Asiatic Black Bear (Ursus Thibetanus) in Laos
A 3-yr-old Asiatic black bear (Ursus thibetanus), weighing 68 kg, underwent a laparoscopic-assisted placement of a ventriculoperitoneal shunt for hydrocephalus in the Lao People's Democratic Republic. Rescued as a young cub with a notably domed head, the bear's condition had deteriorated with age, but euthanasia was not a viable option...Pizzi, Romain ; Cracknell, Jonathan Mark ; Kitchener, Andrew C ; Broadis, Nev ; Laughlin, Denise …
laparoscopy, surgery, Bear, wildlife, hydrocephalus, and endoscopy
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Journal article
Making sense of the senses across species boundaries: designing the Animal Senses gallery at National Museums Scotland
As one of a suite of natural science galleries in the National Museum of Scotland, Animal Senses presents a comprehensive overview of how animals have evolved senses as they have adapted to different ecological niches in order to find food or avoid predation. Using different sensory channels, they also have...Kitchener, Andrew C
animals, Senses, interpretation, exhibition, and communication
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Journal article
Threatened but understudied: supporting conservation by understanding the genetic structure of the flat-headed cat
The flat-headed cat (Prionailurus planiceps) is a wetland specialist, currently facing habitat loss on a serious scale due to massive destruction of lowland forests and wetlands in Southeast Asia. Despite its ‘endangered’ status in the IUCN Red List, there has virtually been no investigation on the population structure nor on...Patel, R P ; Lenz, D ; Kitchener, Andrew C ; Fickel, J ; Förster, D W …
Flat-headed cat Habitat specialist Hybrid capture Mitogenome MtDNA
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Journal article
A fossil protein chimera; difficulties in discriminating dinosaur peptide sequences from modern cross-contamination
A decade ago, reports that organic-rich soft tissue survived from dinosaur fossils were apparently supported by proteomics-derived sequence information of exceptionally well-preserved bone. This initial claim to the sequencing of endogenous collagen peptides from an approximately 68 Myr Tyrannosaurus rex fossil was highly controversial, largely on the grounds of potential...Buckley, M ; Warwood, S ; van Dongen, B ; Kitchener, Andrew C ; Manning, Phillip L
palaeoproteomics, Tyrannosaurus, ancient collagen, dinosaur protein, Brachylophosaurus, and ostrich
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Journal article
Two species of Southeast Asian cats in the genus Catopuma with diverging histories: an island endemic forest specialist and a widespread habitat generalist
Background. The bay cat Catopuma badia is endemic to Borneo, whereas its sister species the Asian golden cat Catopuma temminckii is distributed from the Himalayas and southern China through Indochina, Peninsular Malaysia and Sumatra. Based onmorphological data, up to five subspecies of the Asian golden cat have been recognized, but...Patel, R P ; Förster, D W ; Kitchener, Andrew C ; Rayan, M D ; Mohamed, S W …
Toba volcanic eruption, last glacial maximum, Southeast Asia, hybrid capture, next generation sequencing, and Felidae