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  5. Ancient microbial DNA and proteins preserve in concretions covering human remains

Ancient microbial DNA and proteins preserve in concretions covering human remains

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Resource type
Journal article
Creator (person)
Bonucci, Biancamaria
ORCIDORCID logo
de-Dios, Toni
Barbieri, Rémi
Thompson, Jess Emma
ORCIDORCID logo
Panella, Sofia
Radina, Francesca
Sivilli, Sandra
Kabral, Helja
Solnik, Anu
Tafuri, Mary Anne
Robb, John
Scheib, Christiana Lyn
ORCIDORCID logo
Date published
August 2025
Abstract
Archaeological remains covered with concretions, including human bones, are commonly found in certain areas and time periods of interest for understanding the past, but have yet to be investigated for potential ancient DNA (aDNA) and protein content. We extracted aDNA and proteins in tandem from human dental remains and their surrounding concretions and compared them to non-concreted human dental remains from the same site. Concretions appeared homogeneous in color and texture, consisting of a hard dark gray sediment adhered to the bone surfaces, presumably as a result of cyclical waterlogging of the burial deposits. Concretions were found to contain human oral microbial genomes and proteins, probably leached from the original skeletal source, as well as environmental and human proteins. Despite this, both the original teeth and the concretions surrounding them lacked endogenous human aDNA, indicating that the use of this type of material in future molecular archaeological applications is limited.
Funder
Funder nameAwards
HORIZON EUROPE European Research Council
885137
Estonian Research Council
PRG243
Tartu àœlikool
European Commission
European Research Council
European Regional Development Fund
2014–2020.4.01.16–0030
Journal title
iScience
Volume
28
Issue
8
Article number
113182
Publisher
Elsevier BV
ISSN
2589-0042
Official URL
https://doi.org/10.1016/j.isci.2025.113182
Related URL
https://linkinghub.elsevier.com/retrieve/pii/S2589004225014439
https://www.nms.ac.uk/profile/dr-jess-thompson
Rights statement
In Copyright
Licence
https://creativecommons.org/licenses/by/4.0/
DOI
10.1016/j.isci.2025.113182
Keywords
Proteomics
Microbiome
Archeology
Omics
Additional information
Full text available via the official URL
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